Scaffold Ga0335021_0000095

Overview

Basic Information

• Taxon OID: 3300034023
• Scaffold ID: Ga0335021_0000095
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57971
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (74.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029659	Metagenome / Metatranscriptome	187	N
F030669	Metagenome / Metatranscriptome	184	Y
F044496	Metagenome / Metatranscriptome	154	Y
F047055	Metagenome / Metatranscriptome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335021_0000095_11537_11764	F029659	AGGAG	MLHNINSAIDAFQSTKTQFVKTFVKNEELAKPLNTFIEAQTLYAKAVAVEVNKFFTTLGMSAYTFDAKKAFSKNK
Ga0335021_0000095_51602_51970	F044496	AGGAG	MRNFKTISIAFGVLFAVTNALANDIVNYQIVPVIKVDPIGSMRAISMPRMSCTNVEPVEGAGAPVQPQQQKCVSYSDREFRYNVTAFNVTFEYQGQIRTVKMNYDPGNAIRIKTVTKVYAVE
Ga0335021_0000095_51974_52378	F047055	GAG	MKNSYVIHSIITSLFLCNVAHGKVVLVEDSSIKDGYYMAKVINVKPIIEKVPYMTTKNYCQKNYGTIHYSGPGTNTLVLGVTPPLSTPSCRLVNEQAYHSVVKGYQVTYDFKGTLKTAFLNNEPSEFVQVYNAP
Ga0335021_0000095_52375_52641	F030669	AGG	MTYYVYGAEGSRTTDKVETLLTVCRRQYKLFILGQDYSIEQLRILVPETNFVPHIYHDAKYIGGIRELYDYLYSEVKMEKQFQNETRE