NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335021_0000080

Scaffold Ga0335021_0000080


Overview

Basic Information
Taxon OID3300034023 Open in IMG/M
Scaffold IDGa0335021_0000080 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60461
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (74.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019323Metagenome230Y
F020358Metagenome224Y
F068822Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0335021_0000080_14263_14496F020358N/AMKKFKHFIQGTTVSQEEWEEDVYGPELIETLKQVDGRWALVSKKTNRPLRYYKGEGKPSEEWIAQQEKEIQYFKNMR
Ga0335021_0000080_27696_27947F019323GAGGMIVEKILIAEPVRGFTERDKNSKAILNTDVDSLLKYKIQKRKASELNKNANDINVLRSEVVQIKSDLSEIKSMLLQITNNNRR
Ga0335021_0000080_54635_55189F068822AGAAGGMKNFKSFIQLDEVERVKYKDGIANKMAYANDEVKTKGNRLDNKQAFGEGDAYDKDVKASPKPHDKEAAAQRAKLAALAARKAMMTNKMSEAESHQSKTTMKHISNPNAAEKKAAKDIKPGIKGVRDRLAMLDAAKKRGALKNEEVDLLSDLYDQLDESNQEIFLNQLEEDAEVLLAFAKTIAEE
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