Scaffold Ga0335005_0195248

Overview

Basic Information

• Taxon OID: 3300034022
• Scaffold ID: Ga0335005_0195248
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1259
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F040590	Metagenome	161	Y
F041182	Metagenome / Metatranscriptome	160	Y
F099270	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335005_0195248_140_406	F099270	AGG	MSTNFQSVQAPNRKGNLSKSPAKHSGGATADCGPKHGVSGPTGQQGAPKATGNIASRNQKVQVSTHADYCGTIKNDGYMDKSVKNYLG
Ga0335005_0195248_3_110	F041182	N/A	RAPIISIEHVNNVNKEEEVSADDALDDFLTALRKV
Ga0335005_0195248_410_640	F040590	N/A	MSYGKVISGGKAMTNGLTKGINNKLKSFEESHKNSLVLATAVGKAFNQNPLSDNHLNNINVAAAKKFTTPKLPAKI
Ga0335005_0195248_650_1258	F001059	AGG	MATYDIEALKADLPTAKDLAQFVYDKVGISLDLVGKPKEDQYMVARNALEGKKVPADFATDLNPYIDRKELIPVDEKKKIPARPADLPDPTSEVHFFGATNMPHPTDPQSDRKVQINFRKYDNGVITYQVTGPIEQIAVGERINKFGQKQPEKYSWIDPRTEEILLRRPDGTFTEKGRGVYAFCVGEKGGGIWTLIDRNLMNI