Scaffold Ga0335005_0066452

Overview

Basic Information

• Taxon OID: 3300034022
• Scaffold ID: Ga0335005_0066452
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2404
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F036238	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335005_0066452_1838_2047	F000263	N/A	MVNYDIDGLDIMHGELKNLMLIWEKELEKAEEPKYAEGFLDSLTALYKLTYDLSFAIGIRTENRKDGHL
Ga0335005_0066452_268_417	F001043	GGA	MSDTYQEGFNDGARWAREEITEKLREIDILDIDSWLLDKLADMIEGGNL
Ga0335005_0066452_53_265	F000311	GAG	MYFELSAPNQVAFARATWEAELIGLDPQAMGSLTFNIGTGSIEKVSRIRDKFNLTVIKESDYEPTGYLKG
Ga0335005_0066452_626_1027	F036238	AGGCGG	MGDRANFAFRQRNGETIVLYGHWAGHNMLANLASAVDKARGRWADEAYATRICISQLVGDDWQSETGWGLSVNSISDNEHKIPLIDWSTQTFSLHEEAPWSESTEYKVRGMLDIPMFEMSLDSFVKKHSPALV