NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335005_0038727

Scaffold Ga0335005_0038727


Overview

Basic Information
Taxon OID3300034022 Open in IMG/M
Scaffold IDGa0335005_0038727 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3263
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F003182Metagenome / Metatranscriptome502Y
F050366Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0335005_0038727_1162_1344F003182AGGAGMHILQFDCAICKKLYGKPKQRFGLKKGAELTQHEWFAQCMGCGTFGIKIVDDARIAELSQ
Ga0335005_0038727_39_428F050366GGAMKRWMIEDTCTSALMRVMALVMGGTEKATKEVMASVKTETAAADHDYWTTKFGEVPSYKTREEAEQADETGWAVNGVPMCAHGSMRWNQSKPDAPRAWAGYFCSEKAKEKQCKPSWYVLTSDGTFKPQV
Ga0335005_0038727_511_705F000403GGAMSDFVEIINPRTMTCKLMENGEIVAEYKVEQCDKCSKLVKFDSFGYQKGYDRTENIIWFCGDCR
Ga0335005_0038727_702_1181F000903GGAGMIDRIEEVQCMIAAISHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAEMVVAKRLGYEYEPGITWDKSKADVGEHIEVKWSANPNSNLWIQESDREDRDIAVLVVGNTPKMHIVGWMPVAVAKKPRYKNTSQNNWTVPQVNLQPIETLIRSNYAHPSI
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