Scaffold Ga0335005_0019450

Overview

Basic Information

• Taxon OID: 3300034022
• Scaffold ID: Ga0335005_0019450
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4771
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035733	Metagenome	171	Y
F054589	Metagenome / Metatranscriptome	139	Y
F065546	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335005_0019450_2438_2656	F054589	AGGAG	MKAMHLDHDMRLQAARCMEREGGSFAGHIARAFYVADTQNAEALLTAFDDLFCKFYMEHCRNERMKEREAIK
Ga0335005_0019450_2653_2862	F065546	GAGG	MTTLTTPTQIEGARLLTLRQMLKLEMKGMHRSRSPSAYSLLKQMGFKGTREQVLAQMDEIRSQLIGESK
Ga0335005_0019450_3182_3442	F035733	AGGAG	MNDNMPENMHFYASSVCQWVTTTPERDLRQLIKHMERDGFNYNLFLVPVAHDAKYEIKMYQPQVEGTQWLGYYEVKEETKAKAKRK