Scaffold Ga0335005_0004434

Overview

Basic Information

• Taxon OID: 3300034022
• Scaffold ID: Ga0335005_0004434
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10518
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (79.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011742	Metagenome	287	N
F012211	Metagenome / Metatranscriptome	282	N
F044456	Metagenome / Metatranscriptome	154	Y
F044970	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335005_0004434_6260_6610	F012211	AGGAG	MPTDEERFKYECWAIVQELDPDDIADAIADSVALVEAIKANHAEDVASIVMNRVELKVRRRAELRVFDVVKTAWVDDIEELQAYRNLRIERVQKALDERKIMEAKMDGPFQQMFDE
Ga0335005_0004434_6890_7102	F044970	AGG	MSDFNDYSTMLMAIENKTKELSHKCLNKNYGGFTGDITSIQHELTMLTMWITQAQGEQIRENTYRILNKV
Ga0335005_0004434_8643_8903	F011742	AGGAG	MTTIEFVPFEWVDDDFNPDIDRIEVDYQWHEGDDSVGLLSYCEKTVKWMRFNLEIKDITDELSYADLAYLKHEIQRNDQEIADERT
Ga0335005_0004434_9707_9853	F044456	AGG	MELFYCGVGNAGGHVIETIFTIFAIGFLGIALAIGGVCIMVWMALNED