Scaffold Ga0335005_0002488

Overview

Basic Information

• Taxon OID: 3300034022
• Scaffold ID: Ga0335005_0002488
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14070
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F010237	Metagenome	306	N
F011919	Metagenome	285	N
F013988	Metagenome	266	Y
F021105	Metagenome	220	Y
F023058	Metagenome	211	N
F027779	Metagenome	193	Y
F041766	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335005_0002488_10177_10455	F000722	GGA	VTEQQYPETGITEETRQMYPETYSDKYNKVFKQFIDDIVRPNHIEPPKHTHDILLDELTMMYDAHMTIGGEQNRFNASVIRAAINVIMTCTK
Ga0335005_0002488_10568_10915	F011919	N/A	MNDLQLFAPSRGLGAYREDIAIDRNTVIISPSAKPTSVIAALNALPKSGSKRRRVYEYLKQTGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATDLERPTLAGNMAIVWKAR
Ga0335005_0002488_11439_11612	F021105	AGG	MRNPNEEYDRLHDHMTAIARERDNSNRIITTLQARLEELEDELVLAHEALARRYTRP
Ga0335005_0002488_2807_3433	F013988	GAG	MAVYSITHKYLIDNYAVVQLLTDAEIELGASVVLAGVDATFNGTYTVRALPQYLYVGIDSEGDLLYDPNIPIANQVLVAKTADDVARTAASGTLTITQVCTWVTAANLEDWIGIGTATAADAAFLTVCAAASSQFAWRRRMEAGYVDSLTTVPSQDVFLGTQMYGGALYRQRGSVDQFASFQNMGVTPVMGLNGMIRQLLGIDRPQVA
Ga0335005_0002488_3433_3798	F010237	AGG	MPVPNYTDLFNEGYDDLVAKLSTVVGLQINNDPRNITPPSCLVNIDSIEGYNYNVAKLNFTLQIITLGPGNLDAQKSLLNILAQIYALNIGVVSGRPTNLDIGGSVLPAYELSVSTVVQT
Ga0335005_0002488_6549_7847	F023058	N/A	MAGVAVVGSGNYDLEIDTGYNWNAFTLDDDPKGTLDSTDYVLDGTDQYASVMDGTIGLTAKRGRANTGDQFPYGTMNFTLNDTYADGVFNPFDTSSPYYDPNNSLPGLAPLRKVRFSRYDSLGVKKYLWVGYIVNFDYTFTLGGLDTVSVTCADFSYQLGQTFLAEWNVTEQLSSDRFDDLLDLPEVDYTGTRSIETGVATLGGAAAWTVANGTSVAGYANKIMEAEQGRIFVDREGTITFQKRIGNVLGVPVAEFHDTNPPTKIGYSAIDIAFQADTVVNRASVQHAGATSPEVAEDLTSQATYLIQTTSITDSLVHNDAAALTLAEYLLNANPEARFNSIGTEFPGTPALDQDTLALLDVGSVINVEKSITTSEGPTQFAQNLTVEGLEHRLTLSAGHAVTYFTAPTTIVYELILDDAVYGTLDEDNVLG
Ga0335005_0002488_9009_9443	F027779	AGG	MDEWIRQAVKYSNGAIWNNGSWGIRDMKGTPGSLSVHATGRAWDASYRKTDKYPTANRKGAVAFLNIVIANANALGLECVLDYFPQKFGRGWRCDRQAWSNYSKPTLTGSPGGDWHHYEISPAMADSPALVKQAFQRVFGEIPQ
Ga0335005_0002488_9492_9674	F041766	AGGAG	MTEPKVFIYEVGRCNLENGQEILVQIFRHEDTHKIIRAQIAFRTLAGDSWGVPTELSFTQ