Scaffold Ga0335005_0001940

Overview

Basic Information

• Taxon OID: 3300034022
• Scaffold ID: Ga0335005_0001940
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15986
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (48.28%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026859	Metagenome / Metatranscriptome	196	Y
F066448	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335005_0001940_5062_5268	F066448	GGA	MKVEIDADTADGIVRASIKETIEYLREDIAILKKKKKLEDYQKLELGELMVFLNAMEIVFDYYGGNLK
Ga0335005_0001940_5608_6087	F026859	N/A	MKKNKDLEYYKNECDRWRELYRYKFDNDPITARAARAEDSRLYRKVGKKFIPVNDPYAYDGLREGFWLIKIDKGSTSIRQQIYPEKAAITAAARVCEEKLVDVIRKASEARPANSALTPEQKKDWDKFIGKHGDSFSTLTYPSMQENAEKIIAALIGNT