NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335005_0001337

Scaffold Ga0335005_0001337


Overview

Basic Information
Taxon OID3300034022 Open in IMG/M
Scaffold IDGa0335005_0001337 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19207
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026859Metagenome / Metatranscriptome196Y
F066448Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0335005_0001337_8574_9053F026859N/AMKKNKDLEHYKNECERLRFQLHYKFQSDPVTASAASKEDQRLYRKVGKKFIPANDPYSYDGLREGFWLIHIKEGCTSIRQQIHPEKSAITAAARLMEEKLIKIIREASAARPTKIALTPEEKKDWDKFIAKHGDSFNTLHYPSIQENAEKIVAALVDNK
Ga0335005_0001337_9264_9491F066448GGAMKIKNVNMNVEIDPETADGIVRASVKQTIEYLRKDIAVLKKVKKAEDYQKRDLAEQIRTLDAMEEVFDYYGGNLK
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