NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335005_0000590

Scaffold Ga0335005_0000590


Overview

Basic Information
Taxon OID3300034022 Open in IMG/M
Scaffold IDGa0335005_0000590 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28416
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (32.65%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001338Metagenome / Metatranscriptome719Y
F017613Metagenome / Metatranscriptome239Y
F021297Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0335005_0000590_13488_13808F021297N/AMSCTNQVSLSQGNTFACTFTWTPGATGPVNLLATTITSTLEDRDFNEYAMTVTVAGDGLSFTVAYTGSTASWALGLARWDIKFVFPGSTVSRTEIFRVNVIDSVTV
Ga0335005_0000590_23542_23985F001338N/AMTTENNPDRPPLTSISTNGTYKLKLIKPKFEKVKVWEDGTCSARLFFVDDKGFCLSKNFSTKYGKALAMLVGKYSGKFTEEIRLDATAAEYLQYLEPACGQTILVGVEVEANGEYNGRPQYKYKMTYPKGSQKPTVADALPPEGVNF
Ga0335005_0000590_5628_6500F017613N/AMANSISAAPSVLSAGVLSSLQNKLPVLSGISSVFSARPGSTGMAIQVPLIGTSTATAFGSGGYLTSDDATVTSATVTLTQFKISSRFTPSNLKDYGADFFVNNFVQTASIGLAQKVMDVINAQVTVANYAAGAVTGADLSYDELVGVQKILDDAKAPSPRFAVLNSAYIAGLRKDTTIVGNNVLGANIIRDGDLGIIAGARIYQFANLAGNGEGLAGFVAGPDAIAFASALPDSEGIPGFEVSNAVDATTGLGVQVLVGMEQSGFLNVTATLMFGAAVGRSSSLYRVCSA
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