NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335005_0000354

Scaffold Ga0335005_0000354


Overview

Basic Information
Taxon OID3300034022 Open in IMG/M
Scaffold IDGa0335005_0000354 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35484
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (63.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007415Metagenome / Metatranscriptome351Y
F064500Metagenome128Y
F092039Metagenome107N
F093763Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0335005_0000354_29502_29927F093763GAGMSDGMEITGYNPKFDFKTDLAYGHEGEQNLIDFFHALNAGTVEVKADRYRNGRMAVETQQKPAQGVWKDSGINVTTAQWWAYRFAPDSYVLVSVQRLKNYLRHNYDRLEKRDFAPQSDNPARGFLLFPHHVQDLQTSELYD
Ga0335005_0000354_30059_30244F064500AGAAGMVETMSEYIHQDDAYAWLRDKEIQFAEDDFAKVQAERDALKLKVQELSTEVERLSRELAR
Ga0335005_0000354_33354_33593F092039N/AMALVYWADACGGDAGWLTLEDVEDDGEVLVQSTGFLVPTEDPGAKQNHVTLLQSFHDGEGINLFYIPVAMIRKIILLSC
Ga0335005_0000354_34254_34799F007415N/AVNRKKFMPRKYSYYPAFDGKGAQPGTEKLAALCAARWKTKNLGIYSPRLMRNSHTEGKKIGDPGMEKFLSVHATGAAVDVGYSDRKVGVAMWDWFIKYTKELGIEEIHDYAFDANPKDKNKGYGRGFRCSRGENLQGVKVFSESDNAGSFGGFWLHLELSPEMAKDPEKFEAAWRSLPKP
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