Scaffold Ga0335005_0000243

Overview

Basic Information

• Taxon OID: 3300034022
• Scaffold ID: Ga0335005_0000243
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43379
• Total Scaffold Genes: 88
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (62.50%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004133	Metagenome / Metatranscriptome	451	Y
F015601	Metagenome / Metatranscriptome	253	Y
F024558	Metagenome / Metatranscriptome	205	Y
F033434	Metagenome / Metatranscriptome	177	Y
F038245	Metagenome / Metatranscriptome	166	Y
F039639	Metagenome / Metatranscriptome	163	Y
F039640	Metagenome / Metatranscriptome	163	Y
F046374	Metagenome / Metatranscriptome	151	N
F065787	Metagenome / Metatranscriptome	127	Y
F080054	Metagenome / Metatranscriptome	115	N
F095476	Metagenome / Metatranscriptome	105	N
F099303	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335005_0000243_11809_12303	F095476	N/A	LGEKQPEQDGDIVYYKSEYSDKDTAEHTTNYRFVDDKSISKPTLGLRRLALQGKATLFPISSAVYFLVDIIKLAKSTTWFIDSHGQVFQHKKSTRAKLTTKKINKVLPADGIGCVLELEGVAHRFKTMIQPESYHQYAGVLYMDNSYLFYGYYEYPQKDTWRLV
Ga0335005_0000243_21381_21653	F099303	N/A	MNFIEFTYTKTDGTESKRAVLPLVGPTTFVEGIDVSQMPEDEFVVFCRDFSAMKSAQHEQTMAMLEQFDLKHNYRRFIPAQMSNITTDYV
Ga0335005_0000243_22377_22703	F038245	AGGA	MKIYFGNANEDLFSDGLFVINDNQYYYGVQHGTNPGGLDEVVIFDGCKRKVPLHIEAIPELIAALKEVQRVNEAVKEANRLTERAESRIKGYVYSSWNDDFEVDFDTE
Ga0335005_0000243_23152_23412	F046374	GAGG	MAKTFGNLKSNKLDMMDKLTVGKFAGCRICDIIADDFEYLIWLNKQGFVNFTTPVMADLLSRAGFKEVEQYYKNEIEPWENKDVPF
Ga0335005_0000243_26619_26822	F015601	GGAG	MAGYAKEFLIDAFMSRYIGCDHLSIEKLERLEKMANDLYDRVGRDQFRVYACLDAEAIREYKTKVTA
Ga0335005_0000243_29003_29203	F080054	GGAG	MSTQPNYTAELETLILDVLLPVYEQHCRQRGIASLRNEINPELLKQLKKKKTIPRLFMPKLKDNHA
Ga0335005_0000243_31075_31290	F065787	GAG	MDRKLEYHEIRKTCKLIDYNLKLAGKGKLWVEVYRDEKYEYRALFPDVADWSAVPMTILTHPIHETQTDLS
Ga0335005_0000243_32352_32726	F024558	AGGA	MIVVLYTEEFEPILPIDLPLWLLDRLEQEGAVRVAVSKPMGFKGERIPVGMIGNEDMPTVRIRYEKLRWHDGSLKTLLVTPDEELALTLTPEWLPGQRAPIQLYLNTVRKMHEELIKQIRKNQS
Ga0335005_0000243_33417_33650	F039639	AGGAG	MNLDREFIKWFYEDAYPEQGSNRRQVYSTTQNSQNIDIIDYWMREAFKAGAEAATHGYEVNALEQFEAFNINRNYPL
Ga0335005_0000243_36145_36423	F039640	GGA	VQDALLTTYTTTYNTDMNIEDLLKQSQKTAGTIDIIHYTNLILLEACRLIKDTPTTAAFTTFDQAVAETQRADCFKQVYNQIVENIKDGNNS
Ga0335005_0000243_37254_38045	F033434	N/A	MLFKKQEIHSLDFSGTEGMNVEAWETWAEQMQLSHLHGWLLPQLVAWYGSWTLVKVGDTIDCLETVKANCPDPKSRAFYMLSRIKRSLLLATQTKFPDYASLTPLILMGQKRMQGVDYEAWRSASGFQYILEPRLLSAMILEPKDLLLVNSLGSERLIEIQTQGLTTKTGKTAGSRKPAKSTWSLSGIQDTEIGHLPKLTQTILTQCWLAHPELRTPYMILDFNNWDSIPQPLISNNLFKEVVSTSTKQDSKKDMANLMPWDL
Ga0335005_0000243_38033_38395	F004133	N/A	MGFMKYTKEITDKLIADYRSGVAVADIATTLDVPERSVIAKLSSLGVYLKKSYVNKRGEVPVKKSEHIERIAELLQVDEELLESLEKVNKTVLKLIENKLAQSDPKLDHAVVNRDIFALN