Scaffold Ga0335005

Basic Information
Taxon OID	3300034022 Open in IMG/M
Scaffold ID	Ga0335005_0000048 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034022 Open in IMG/M

Scaffold ID

Ga0335005_0000048 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	88042
Total Scaffold Genes	104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (9.62%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

88042

Total Scaffold Genes

104 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (9.62%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041487	Metagenome / Metatranscriptome	160	Y
F044795	Metagenome / Metatranscriptome	154	Y
F062766	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335005_0000048_10496_11260	F062766	N/A	MTANQMADELELKLDRSDSFGSPGYEDFELSSVLTEAEQLYVKKYFDELNNRKGKGFQETEIRDQGLGALIKDAPALTPSASQAGIIVNTDVTGKFFDLPLDHMYTIYEECTIDKMTCGTTTNIVGYVVQIAHNEMQRFSWSKYKKPFYKSSGDARIWRSEFSRQVTGISPTAPATAKRHELFTDGTFNINIYHMRYIKNPQAIVVDRDTPANQQNCELDTSTHIVIIDIAMDLMYQRVKEQKMQIVEPFKELE
Ga0335005_0000048_11264_12202	F041487	N/A	METAKIEKQIYGSFLQNRIVAIKPVESSGKWSTLLVQGQDNKKDPFMYNKTKRSFQVPLNNANLGGGVKVILDDQKRVKVQKYMESFPNGMTQKEFFEKELGVDLNPTLKQEDNFWRTDRRGRVVLTKEGTTLNLNQSLDMLKYLILLADKMRISPSYDDRTLKATYEFMIVDESKVTTKKLEEASVKANAFVKYAEITNSKTATIGFIKSLGRTIPATANDEWLKNEVLNIVDSNPTYFLEIVNHPQYAERIFVQEAVEAGAVIRKGEKRYTLDNGAELGDMTDVINYLLNPDNQEVKLRVKAKIDLAKRN
Ga0335005_0000048_40243_40539	F044795	N/A	MIKDKYIWVKAKLTAHPALRDSNERLYYNYLQEIGYDINKPTKEFLKDMEKRVIPYMDSFGRASRKVQEEHPHLRGATWQKRKTVKEAEIRQEIRDLT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335005_0000048

Overview

Ecosystem & Geography

Associated Families

Sequences