Basic Information | |
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Taxon OID | 3300034022 Open in IMG/M |
Scaffold ID | Ga0335005_0000048 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 88042 |
Total Scaffold Genes | 104 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (9.62%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F041487 | Metagenome / Metatranscriptome | 160 | Y |
F044795 | Metagenome / Metatranscriptome | 154 | Y |
F062766 | Metagenome | 130 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335005_0000048_10496_11260 | F062766 | N/A | MTANQMADELELKLDRSDSFGSPGYEDFELSSVLTEAEQLYVKKYFDELNNRKGKGFQETEIRDQGLGALIKDAPALTPSASQAGIIVNTDVTGKFFDLPLDHMYTIYEECTIDKMTCGTTTNIVGYVVQIAHNEMQRFSWSKYKKPFYKSSGDARIWRSEFSRQVTGISPTAPATAKRHELFTDGTFNINIYHMRYIKNPQAIVVDRDTPANQQNCELDTSTHIVIIDIAMDLMYQRVKEQKMQIVEPFKELE |
Ga0335005_0000048_11264_12202 | F041487 | N/A | METAKIEKQIYGSFLQNRIVAIKPVESSGKWSTLLVQGQDNKKDPFMYNKTKRSFQVPLNNANLGGGVKVILDDQKRVKVQKYMESFPNGMTQKEFFEKELGVDLNPTLKQEDNFWRTDRRGRVVLTKEGTTLNLNQSLDMLKYLILLADKMRISPSYDDRTLKATYEFMIVDESKVTTKKLEEASVKANAFVKYAEITNSKTATIGFIKSLGRTIPATANDEWLKNEVLNIVDSNPTYFLEIVNHPQYAERIFVQEAVEAGAVIRKGEKRYTLDNGAELGDMTDVINYLLNPDNQEVKLRVKAKIDLAKRN |
Ga0335005_0000048_40243_40539 | F044795 | N/A | MIKDKYIWVKAKLTAHPALRDSNERLYYNYLQEIGYDINKPTKEFLKDMEKRVIPYMDSFGRASRKVQEEHPHLRGATWQKRKTVKEAEIRQEIRDLT |
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