NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335005_0000048

Scaffold Ga0335005_0000048


Overview

Basic Information
Taxon OID3300034022 Open in IMG/M
Scaffold IDGa0335005_0000048 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)88042
Total Scaffold Genes104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (9.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041487Metagenome / Metatranscriptome160Y
F044795Metagenome / Metatranscriptome154Y
F062766Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0335005_0000048_10496_11260F062766N/AMTANQMADELELKLDRSDSFGSPGYEDFELSSVLTEAEQLYVKKYFDELNNRKGKGFQETEIRDQGLGALIKDAPALTPSASQAGIIVNTDVTGKFFDLPLDHMYTIYEECTIDKMTCGTTTNIVGYVVQIAHNEMQRFSWSKYKKPFYKSSGDARIWRSEFSRQVTGISPTAPATAKRHELFTDGTFNINIYHMRYIKNPQAIVVDRDTPANQQNCELDTSTHIVIIDIAMDLMYQRVKEQKMQIVEPFKELE
Ga0335005_0000048_11264_12202F041487N/AMETAKIEKQIYGSFLQNRIVAIKPVESSGKWSTLLVQGQDNKKDPFMYNKTKRSFQVPLNNANLGGGVKVILDDQKRVKVQKYMESFPNGMTQKEFFEKELGVDLNPTLKQEDNFWRTDRRGRVVLTKEGTTLNLNQSLDMLKYLILLADKMRISPSYDDRTLKATYEFMIVDESKVTTKKLEEASVKANAFVKYAEITNSKTATIGFIKSLGRTIPATANDEWLKNEVLNIVDSNPTYFLEIVNHPQYAERIFVQEAVEAGAVIRKGEKRYTLDNGAELGDMTDVINYLLNPDNQEVKLRVKAKIDLAKRN
Ga0335005_0000048_40243_40539F044795N/AMIKDKYIWVKAKLTAHPALRDSNERLYYNYLQEIGYDINKPTKEFLKDMEKRVIPYMDSFGRASRKVQEEHPHLRGATWQKRKTVKEAEIRQEIRDLT

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