Scaffold Ga0335005_0000015

Overview

Basic Information

• Taxon OID: 3300034022
• Scaffold ID: Ga0335005_0000015
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 117174
• Total Scaffold Genes: 157
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (13.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014975	Metagenome / Metatranscriptome	258	Y
F015337	Metagenome / Metatranscriptome	255	Y
F021980	Metagenome / Metatranscriptome	216	Y
F024553	Metagenome / Metatranscriptome	205	Y
F055726	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335005_0000015_22592_22738	F015337	N/A	MKKVEMEPVEFWHFRKLAFAMSIAFACTIAHGVYIVEANIDQLQQLGY
Ga0335005_0000015_22861_22980	F021980	N/A	MNKFICSECGTTYSSPETTPPPGIKWSDGHVCTPKLVKE
Ga0335005_0000015_27714_28070	F024553	N/A	MAKLNKAIQDVLDNTSDVLYREEIYINGVHEYDYHKLKVDVNITVHTLYYSDHAEWGDHVRKTVAMQLVDNGNGIEIIGVNAKKEINYAEAEQLHILLRLSCTQCVYQISEPTLKKEF
Ga0335005_0000015_31084_31293	F055726	N/A	MDWLEDWEYPNDHIYAMERQKDIESSWQQWEEEQMSTRLPATIQVLTPITTDEAECNTRTIRRAHQKKL
Ga0335005_0000015_49114_49338	F014975	N/A	MLVIHPTYQGYVCGYNEAHFILAVETKDDKNFFRKLQNPYIMEEYKDIKYRYVYEDERELIKQYSNVKENKFDN