NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335004_0099809

Scaffold Ga0335004_0099809


Overview

Basic Information
Taxon OID3300034021 Open in IMG/M
Scaffold IDGa0335004_0099809 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1946
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011750Metagenome / Metatranscriptome287Y
F029747Metagenome / Metatranscriptome187Y
F038235Metagenome166N

Sequences

Protein IDFamilyRBSSequence
Ga0335004_0099809_1377_1616F038235N/AMIREILAPFERVTYVREDGNQAVYKVFRPTKHLFTNKKRDNGRVVGFRAWKMPDCGADERMGWRSFRFDRIANRKLTFI
Ga0335004_0099809_1635_1829F029747AGGMKYELILQTATCDSFSTFAHTREGLTAAFERLDRERLKDGFQSAKIVSDRDGDVFVLDHNLVSA
Ga0335004_0099809_868_1089F011750N/ALTFTLSSEKIVPMKNNWIPRSQRWTLAERQEKKLQAKNARELRTMFWRESQAFRLQIQKEISEKVLAKRAALE

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