Scaffold Ga0335004_0099809

Overview

Basic Information

• Taxon OID: 3300034021
• Scaffold ID: Ga0335004_0099809
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1946
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011750	Metagenome / Metatranscriptome	287	Y
F029747	Metagenome / Metatranscriptome	187	Y
F038235	Metagenome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335004_0099809_1377_1616	F038235	N/A	MIREILAPFERVTYVREDGNQAVYKVFRPTKHLFTNKKRDNGRVVGFRAWKMPDCGADERMGWRSFRFDRIANRKLTFI
Ga0335004_0099809_1635_1829	F029747	AGG	MKYELILQTATCDSFSTFAHTREGLTAAFERLDRERLKDGFQSAKIVSDRDGDVFVLDHNLVSA
Ga0335004_0099809_868_1089	F011750	N/A	LTFTLSSEKIVPMKNNWIPRSQRWTLAERQEKKLQAKNARELRTMFWRESQAFRLQIQKEISEKVLAKRAALE