NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335004_0043312

Scaffold Ga0335004_0043312


Overview

Basic Information
Taxon OID3300034021 Open in IMG/M
Scaffold IDGa0335004_0043312 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3183
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007359Metagenome / Metatranscriptome352Y
F010746Metagenome / Metatranscriptome299Y
F016115Metagenome / Metatranscriptome249Y

Sequences

Protein IDFamilyRBSSequence
Ga0335004_0043312_1866_2261F007359AGGAGMKHIKLYKQNLGAHWVIGIKGSKDRIEQFHNRVYNWGGTKGELQWMADDFAYFWITLEKLERVMFKYVMNSMSDKLGKKFRGSKGGLKAVVMNRVKNTINKIPSEFFVRTAQVEPTYCLGQVSAEKLDTDS
Ga0335004_0043312_316_675F016115AGGAGMKVLEESFSSKGFKLQQVRRDGDVAIYKKQLDDPESENHHYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCTTIEDANRRFGELQEKLTNYNATAILPSGEKRGRGRPRKIA
Ga0335004_0043312_707_943F010746N/AMTYKCAVSGEAIPPERVEALQVLGVPEALWTKKEYSQVRKLKAVYAGDDGSNDIVICDNVDGGSLFDNEVVVEVENDI
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