NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335004_0027728

Scaffold Ga0335004_0027728


Overview

Basic Information
Taxon OID3300034021 Open in IMG/M
Scaffold IDGa0335004_0027728 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4082
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029677Metagenome / Metatranscriptome187Y
F034149Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0335004_0027728_3865_4080F029677GGAMNELGKSLQEWWDSDACKQLQKESEEAKQRAVGKYHMLSEEDKIDMVQAICYIMCKAEQEGCSHRALMDALG
Ga0335004_0027728_502_1083F034149AGGMSISQGLVMDADEKPGFEILHLSFRKQESEAFSGASINFYHGNIVFRLTDESAVGRMQYYLEENEKLRVAPDEDLLNSYYKDLHFVFDKSEELDEEKDGEKYTPLQILNKNGIKDEDVFIYAYRRNMMPLHDFIQYHEKFDVYQMREYFQDTPVVRGIIQYLQDMKDGKENPSRTVYHEQFLNTLENLCWWWD

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