Basic Information | |
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Taxon OID | 3300034021 Open in IMG/M |
Scaffold ID | Ga0335004_0002858 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12963 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001326 | Metagenome / Metatranscriptome | 721 | Y |
F001872 | Metagenome / Metatranscriptome | 623 | Y |
F003964 | Metagenome | 459 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335004_0002858_10876_11406 | F001872 | N/A | VAIAKAKAGVPNARDYIGNADGASPAPRAGMNEWIKQAIAASNGALWNNGSWGQRDMRGKPGSLSVHATGRAVDLSYRRSEKNPKAGRKEALIFIDKLVANANDLGLQCILDYFPEPQGRAWRCDRYAWLKYEKPTIHGAPGGDWFHIEITPQAADSVIWVKAAFLKVFGEIPPKA |
Ga0335004_0002858_4268_4900 | F001326 | GGAG | MATYTVTNKYLIDNFAVLQLLTPSEIAVGSSITVAGVDATFNGSYSVRALPQYLFLGIDTQGDLLYDYQVPIADQVLYAKTASDVERVAASGTVANDPVCTWVTAAQVMSYLGITITNPSDDYTLLTQSVSAGNQFCYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIEATYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA |
Ga0335004_0002858_6198_6701 | F003964 | GGAG | VSTKIEVVGLKEALKTLNKIDKSLRREITKDYKKIVQPVIDDANKLVPSNVPLSGMARNWSTRSGFKMLPWIPGMKQKIAAKINTRNIKEYGGNKSNVGTFAIQWQGATGTMFDMSMAGALGRALSERYGDRSRVMWKAYEQRENDVMSEMEQLVKRVMSEANRETA |
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