NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335004_0001056

Scaffold Ga0335004_0001056


Overview

Basic Information
Taxon OID3300034021 Open in IMG/M
Scaffold IDGa0335004_0001056 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21193
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (30.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037076Metagenome / Metatranscriptome168Y
F046856Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0335004_0001056_10902_11372F037076N/AMDSFRKNNIPMITLDVRISCDTFWNYKFNIPIRINDYYNEDIARNTRNIRHGHHGHHGGGGTASDTCEIGNIGRSDPMFIQLETHLVDYVIQYIYDDLIQKRQQRDIPILLKKARKFHIHGRTLEDLLFPAGNSINTHDTEGHSMPENTVYICTHC
Ga0335004_0001056_16742_17560F046856GGAMEKVTNALTAIKEASVSSASTVGGFFSSTAESGVSIFKGTSLGESFFKNISIIIVVVFILLGGILYIEFATGAAGSTATTTGAVTTGPKKEFVDRTVYIEPNTGLDSGVGTTAEPRALPTDVPWTVPALSIRNELKEAFGAKYTDAELENIHTKCSDKFCVMNQKSPEDLEKACNSVTSRTMCGTKCCCGWTKYVGFEGDNDPIVVMNTAEANANDPSGQSSKVPGKCVAGNSKTPFDRVDNHNRARDIEYYYYLGQCVGGRGCMNKGSIRS
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