Scaffold Ga0335004_0000327

Overview

Basic Information

• Taxon OID: 3300034021
• Scaffold ID: Ga0335004_0000327
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38509
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (67.80%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008617	Metagenome / Metatranscriptome	330	Y
F018140	Metagenome / Metatranscriptome	236	Y
F082700	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335004_0000327_2235_2468	F018140	AGG	MVDEPKSVGGVLTASLPAAIAAGMVAIGALLISMQVQSARIEATLVQMAKSVEELKNDARAELADLDKRVRALEMRP
Ga0335004_0000327_25736_25912	F082700	N/A	MMATMDEYQGQGGTYLLDPKTGKRKLIERTEPATFSEPQKEVTSNAAPEPQAPNPGKN
Ga0335004_0000327_9924_10058	F008617	N/A	MINRINNAICLLVVAAVFAMIGLEASGHHGSTHSGNQAYVEVRK