Basic Information | |
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Taxon OID | 3300034021 Open in IMG/M |
Scaffold ID | Ga0335004_0000316 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 39475 |
Total Scaffold Genes | 62 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (53.23%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F046256 | Metagenome | 151 | Y |
F081073 | Metagenome | 114 | Y |
F095372 | Metagenome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335004_0000316_15320_15544 | F046256 | N/A | MTRHDYFATGTFPWSGLRLAGRRFDSPELFAMMRRQCLSDNCVRHACADLDVLPYAEEVAEIEAHICRIEAAYV |
Ga0335004_0000316_16350_16541 | F095372 | GGA | MVTTNMNIHAIAQSAATFNADHDYDVGAALKLTELVIRHAHIVQLARKEAADPQLALPLEVAE |
Ga0335004_0000316_20239_20394 | F081073 | GGAG | MTTHDIDLVTQWLAARDNEKAGAKVYHGERPCLPAAAMLAVAERIWRKRSR |
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