Scaffold Ga0335004_0000316

Overview

Basic Information

• Taxon OID: 3300034021
• Scaffold ID: Ga0335004_0000316
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39475
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (53.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046256	Metagenome	151	Y
F081073	Metagenome	114	Y
F095372	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335004_0000316_15320_15544	F046256	N/A	MTRHDYFATGTFPWSGLRLAGRRFDSPELFAMMRRQCLSDNCVRHACADLDVLPYAEEVAEIEAHICRIEAAYV
Ga0335004_0000316_16350_16541	F095372	GGA	MVTTNMNIHAIAQSAATFNADHDYDVGAALKLTELVIRHAHIVQLARKEAADPQLALPLEVAE
Ga0335004_0000316_20239_20394	F081073	GGAG	MTTHDIDLVTQWLAARDNEKAGAKVYHGERPCLPAAAMLAVAERIWRKRSR