Scaffold Ga0335004_0000263

Overview

Basic Information

• Taxon OID: 3300034021
• Scaffold ID: Ga0335004_0000263
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43857
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (26.32%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007505	Metagenome	350	Y
F062581	Metagenome / Metatranscriptome	130	N
F100736	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335004_0000263_20887_21090	F062581	N/A	MADAYFDTETIPLTSVIGGRIDLNTLIEELDRMYPDHYPDHEMTPWEAGRMAGVIEVIRFLKSKRKL
Ga0335004_0000263_216_467	F007505	N/A	MNKIENLRSALAIREDEVLNYQINIDNYSRAILKINAEYADNAVMIAFRDRLATLLEEHKTEQLKSIIIRDVIADQLAELEEQ
Ga0335004_0000263_33472_33717	F100736	N/A	MDFESALRITSRQHLPNPEQLAGHLADVLTWRQLRKLAKRNNIKQYSYLNKKGLATVLAYQAFNKASRYPQINGLEIVHAG