Scaffold Ga0335004_0000053

Overview

Basic Information

• Taxon OID: 3300034021
• Scaffold ID: Ga0335004_0000053
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 112418
• Total Scaffold Genes: 104
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (41.35%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Aokuangvirus → Aokuangvirus SCBWM1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029413	Metagenome / Metatranscriptome	188	Y
F034548	Metagenome / Metatranscriptome	174	Y
F039602	Metagenome	163	Y
F041725	Metagenome / Metatranscriptome	159	Y
F093765	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335004_0000053_105384_105878	F034548	N/A	MDEFLSSSHGVPDAPTPISSAGTPTQSYRNAAGDFDLKNKYGSRKVKSRKDSDQPKEGDEPMRDGTLPKYNEGPLATGGTEKDDATKRYFGDFSIEAKRNVMDLLKTHPMFDQKGNMRMGRVQNNTREVMPHDQTKTVENGGYLIRQDQPQASQKSYGTKNHGS
Ga0335004_0000053_10708_10896	F039602	AGGA	MKKQKKSRVESVGVLLFKGVIDTYYLTVPYDKKNRVIPSSVECAYNSRYFDLDQTVNMLRSL
Ga0335004_0000053_5295_5843	F093765	GGAG	VEIFYPVERLLANPRIFFAIANALEGPDGETLKNAFYELIEHGFGEYEDPEEIEFTADEICFSMDHSDGTVQMTLNTGLASILKPIDGELRAQITNDHEMAAASAIYDRIVKSIVEANPDFDGNIALVSPPTPGNSYLRSEDGERFEGAFHLLSDPERQYAFNVDIIDVQADILRATYKPIY
Ga0335004_0000053_53367_53891	F029413	N/A	MRKDSINNEALEKAYLIYKEHGHEIVDYDFSHAPTDYQRGTVREPEQVSVVEGAFKELVNPANVSNGFRYEDLKSKADALDARIDEQQNKLRVCRLRGNFQEFHRCMQEMQDMIKEKERLDAKMAVAAPGGNAGQKQMDDYNRTYDQNDNYSEITSIADRIAALEEQIKAYMEG
Ga0335004_0000053_6702_6905	F041725	N/A	MVDTVERYYQKYCEKPNDANARAYCLWRLRLHRRLKNDKALLESINEARNLGLHDERPGKLCWDCEF