Scaffold Ga0335002_0136760

Overview

Basic Information

• Taxon OID: 3300034020
• Scaffold ID: Ga0335002_0136760
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1607
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011484	Metagenome	290	Y
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F068766	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335002_0136760_1128_1406	F068766	N/A	MHSTKEEKMTEDNVVGFHPKNKLVNFYEIATAEGNAVWGGEDPHSAVQWLRQSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVFAVMAGTQ
Ga0335002_0136760_127_300	F011484	AGGAG	MRELEQFLNVEAEWVLERLSNSTEANDRNYYQGRIDQLAQVRRLLNHPQILREEKTA
Ga0335002_0136760_579_827	F026864	AGG	MMSEQDKMAQFVFTVVIAPANKQYDVELWDFAGEEPKQLSTGQASNWRTALGEALSKIELPTDKVEKTINDVIKEGVEDEGV
Ga0335002_0136760_980_1159	F023834	GAGG	MSEPTVEYWKAKAQLCRDLALAQIIDGDEKMEKEAGMNLMRMTYALSMVDAFNEGGEDD