Scaffold Ga0335002_0132324

Overview

Basic Information

• Taxon OID: 3300034020
• Scaffold ID: Ga0335002_0132324
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1643
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003662	Metagenome / Metatranscriptome	474	Y
F011843	Metagenome	286	Y
F021490	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335002_0132324_1260_1583	F021490	N/A	MRFEKATGGWGGDECDQVVVCIVLDRQDHGPELKASEDGQMTDLLTALHLSVMLLDLKIRMMEAINEDRFDLAMTYHLLILVRTDELDAHRWAMSPKAWAIYETIHP
Ga0335002_0132324_724_888	F003662	N/A	MKTKQATVTIKGQEWIVLDTDEAQDKKVFCKLMSLDGTTVWHTWVDINQIVGII
Ga0335002_0132324_885_1049	F011843	GGA	MNTQMLIKVRQLFNVDYVPRSTNRHNQLQYIKALRMLGNKWLTHKDNEVQKIAQ