Basic Information | |
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Taxon OID | 3300034020 Open in IMG/M |
Scaffold ID | Ga0335002_0091168 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2094 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002269 | Metagenome / Metatranscriptome | 576 | Y |
F007029 | Metagenome / Metatranscriptome | 359 | Y |
F029049 | Metagenome / Metatranscriptome | 189 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335002_0091168_1709_1894 | F002269 | AGGAG | MKEQAIAAGKSYLRSAVACAAALYMSGITDPKILANAFIAGLIGPLLKAVQPSEGQFGVT |
Ga0335002_0091168_3_428 | F029049 | N/A | VSQVAKVILDRSQEITAHQKGLDRVIAINADPNDANQFGQKFTNFHEFIWQKAEAAGAETAVANYFGDYGFVPKVNTFNDEPDVGENIEVKWTKHANGHLILQNRGPGRPNDVAVLVTGWSPVYILLGWMPVHMAKVPKYKH |
Ga0335002_0091168_604_1218 | F007029 | GAG | MGFLDNYEDVNARIKRFRSEFPSGRLVAYIEDIDIIKGTILVKAEAYREYEDNVPSAVDYAFGNVSTYPNNMKKWFIEDTITSAYGRVIGLLTPSLEHNSRPTVQDMEKVETLPADSDPWSKKASIEDMSTMATAILEIGTQLGGELVAEPPRCPHGTMVWAEGTAKTTGKPWAAYKCTEKIRANQCQPYWHVLGSDGKWKPQV |
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