NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335002_0037237

Scaffold Ga0335002_0037237


Overview

Basic Information
Taxon OID3300034020 Open in IMG/M
Scaffold IDGa0335002_0037237 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3570
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019600Metagenome / Metatranscriptome228N
F026810Metagenome / Metatranscriptome196N
F033705Metagenome / Metatranscriptome176N

Sequences

Protein IDFamilyRBSSequence
Ga0335002_0037237_1258_1614F033705N/AMEDPVVAIHPLDYLFQGLEAAEVLKLHLVSLVKEEANRLRNLKLKLNSIRKLVEVNQTNSRKLVQIFQEDQNIMPLVAKFITILTELDEISACNTISEMIGVLNKISECILQIQIHLN
Ga0335002_0037237_1581_1967F019600N/AMYTPDTDTSKLEVGYNLEKSLKEARETVYEGRKAVEDLTSSITQLVYEEDRRRKEFTEILAAIQAVLDTVQNKSIAAYQRYNGDAILTSNLKALNKEILKATGLVSSSDIEEMKEIIEDLANWKLNEQ
Ga0335002_0037237_2804_3397F026810AGTAGMAASINKRVLTMTNEEHVDLFKGGLKMLLNFITTAIDILKDNMKGTIGLYYGLEPWGRFLQYYLAMFEKTLVLHKKQVNDQGYLIAERLSLPLMKDIGILIDICKEGRTPNTLHKLEAYHHHVQYLLSKPNSEWTEDLMKVHIFSINSTEFEKIKEKVNDPELVNKLGVVTNQALVLNPSQVEQSQNSVLDLSLSRQ
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