Basic Information | |
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Taxon OID | 3300034020 Open in IMG/M |
Scaffold ID | Ga0335002_0006852 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8728 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (57.14%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F051072 | Metagenome | 144 | Y |
F056550 | Metagenome | 137 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335002_0006852_2_187 | F051072 | GGAGG | MQNDFNRSTPIKNVTGGGHSAARYTGTHGHKERSHYWVFIPGEGWVTWLEIHKQFSAAFNDW |
Ga0335002_0006852_8111_8728 | F056550 | N/A | VECFAQYWGLFSCVSYVRPSDPKQRDKMRFGRVLELEIWPHRYDEYRASGKPWGDFVFGLFPEFAQLNQRPEFDLIDEQPPLEDYGFSREICLLAPFGYSQGKQYHAGALMEACRRVAKRPIVFLADEAQEAKLLTWRVPQSMILRAKSPAHLPRIIRDAEEMFTINSSPCIIAGAVRREFWHVSSGVAQDDAFSPASRVVTVGD |
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