Scaffold Ga0335002_0002033

Overview

Basic Information

• Taxon OID: 3300034020
• Scaffold ID: Ga0335002_0002033
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17204
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (55.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015082	Metagenome / Metatranscriptome	257	Y
F057371	Metagenome / Metatranscriptome	136	Y
F080037	Metagenome / Metatranscriptome	115	Y
F106141	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335002_0002033_12880_13080	F015082	N/A	MSESDIYWTFVTAIKYAGSFYQAMGIAGLAADPNNKRRILAAFPEMVATYGTASRLHQTMRAGVAA
Ga0335002_0002033_15158_15343	F106141	GAGG	MTKTRAVFFQKDNERIVIWTNHIRWTVTDMAAGGTKRYTKQLAMALSASLMAEGYEATVH
Ga0335002_0002033_5377_5526	F080037	N/A	MTQAMAYAHAIRDNAQDDGVPIPMELVASFQADYNNIIAALNEAHNLAS
Ga0335002_0002033_5531_5815	F057371	AGG	MQEIKVRFEPADLTALDHQAAVAGTSRSAFIRNKALSLPVARLNTVEYHALVADAVGAMRGDLPRQQVEYLVAYVITRLDKHQRQAVAGHQPLA