Scaffold Ga0335002_0001504

Overview

Basic Information

• Taxon OID: 3300034020
• Scaffold ID: Ga0335002_0001504
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20322
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (81.58%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006739	Metagenome / Metatranscriptome	365	Y
F015719	Metagenome / Metatranscriptome	252	Y
F022871	Metagenome	212	Y
F051888	Metagenome / Metatranscriptome	143	Y
F067677	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335002_0001504_11403_11876	F051888	N/A	MTSFALSSSTQSFSCSHENPATSLDTRDEYCVECNLLQEGSSAQYALDFQEINRSEQESEPSLSIDIPDEKGYGHQWTNRDGEYLDGAYDITDRPPGWLFLGKHVFPMFKQDELNAYLALPSWATVCSTCHYQINKYMGCLTCHISYRNTKYLYWIS
Ga0335002_0001504_11888_12268	F067677	N/A	MYLVTAWDFPLRLVLGEKSLSVKEIIMNKFSFENARVNKVWDNKNRFNLGILDSRAVAQPDGSYQSVFVASRIVTTANPDHLEFIRKNLVDNSEAVVNINGYMETKAGKKPGTWYDNLVITEIALA
Ga0335002_0001504_3_311	F006739	N/A	KGYQAKATIATPRQRIMQFPVYCFDIETDRYNVVSGYEGKALTRLQLLENVEENGDVVTWQDLTTGESRQVVIEQISFTRMTPPDKRFDGFGGVIEITIRTV
Ga0335002_0001504_3818_4129	F022871	AGGAG	MSELENVWDNDEEFWDFVGENRRMVGLSVSDGQGLDILNALRDIYLTIEKEPDSAMRMLTLLGTVIYASSIGEGKQFTDEIQVAAAMEQFDTNIKDILDEESR
Ga0335002_0001504_7429_7875	F015719	AGGAG	MYYTEVDGTEPTISIQVKDTKYTFTNDSLVRLIEEKENLRTELVQVERKLKSTQFDVKEFFQSRYETDQSEILCEVDDVNSLLKDIGSDELTKSWSATVTITATVTGVEAPNAEAAREIIEDAFEINLTVDGDVWVDDLTVESCYPEA