NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334998_0475562

Scaffold Ga0334998_0475562


Overview

Basic Information
Taxon OID3300034019 Open in IMG/M
Scaffold IDGa0334998_0475562 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)702
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019645Metagenome / Metatranscriptome228Y
F076944Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0334998_0475562_11_235F076944N/AVEDETDVDDQDLATCDFNKERCDYLHEVSVIFWDEFISNDCILMEAVLEEFKTRWDRPRYYVFVCAGDFAQVCV
Ga0334998_0475562_323_700F019645N/AVKGNDKPAILEALISSNNKVWGEFNMHPLTTNMRLATAAAAQARGGLLSQEEEEQLQYADMLIDVSNNRNSPWCQVIEHKDENISKLGLPFMQNYTQADHKSAVEWLYPGGHLDFSATILCSNNES
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