Scaffold Ga0334998_0123661

Overview

Basic Information

• Taxon OID: 3300034019
• Scaffold ID: Ga0334998_0123661
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1687
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018127	Metagenome / Metatranscriptome	236	Y
F029017	Metagenome / Metatranscriptome	189	Y
F102503	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334998_0123661_1280_1546	F029017	GAG	MDELGFVTWKLVQWVLWAGPFGVGAFLAAIAAAAFAAGYFFDPVALRLRRSKRTDNPMGNVKMDHIKHDILPDGTLGPGDPRGLEDPE
Ga0334998_0123661_80_289	F102503	GAGG	MTERKNISQPKEVWAAWDRQAAAMDMTLSGLIFEAMNEHLGLFLTRKTKRRPESKPVARKRQKRNLGPG
Ga0334998_0123661_904_1278	F018127	GGAG	MAKQKDNWIPWVIIGGLAFYVFSQQPKEGGDPKPAGVTAVVRSTIPSIRAAWKQVFLDAAAKIEDGTIANQEQWTKFIADNAGGKNREAMDKVYSAIDELKLPVTFAGREAEIARINKEIASAW