Scaffold Ga0334998_0066929

Overview

Basic Information

• Taxon OID: 3300034019
• Scaffold ID: Ga0334998_0066929
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2457
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F046686	Metagenome	151	Y
F055450	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334998_0066929_1052_1354	F055450	GGAGG	METNKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWIDIDGNTIPVVGVRIRTADGRGKPVLKESLHQGENQGNNGGEA
Ga0334998_0066929_1438_1635	F046686	GGA	VRAGLTTSQTTPKAQLTELLNSLESVVDSLNYKSFTVYDTLNTATENLRVALSNIATEEDGTDTV
Ga0334998_0066929_33_275	F026864	AGGGGG	MSEQEKMAQFVFTVVIAPANKSFDVELWDFAGEEPKQLSAGQATNWRTALGEALSKIELPTDKVEKTINDVIKEGEESEG
Ga0334998_0066929_473_649	F023834	AGGAG	MSEPTVDYWKAKASLCRDLALIQIEDEETEKEAGMNLMRMVHALSMVDTFNKGGEDDN