Scaffold Ga0334998_0044024

Overview

Basic Information

• Taxon OID: 3300034019
• Scaffold ID: Ga0334998_0044024
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3146
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024292	Metagenome / Metatranscriptome	206	Y
F047008	Metagenome / Metatranscriptome	150	N
F099176	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334998_0044024_1533_1838	F024292	AGG	MKYTKEITDTIVQQYAQGADVTDIASSLGVPDRSIIAKLSSLGVYQKKVYTNKRGEVPIKKWEHIEHLATLLGVNSDQLESLEKVNKSVLVLLTKRLSGQT
Ga0334998_0044024_2939_3145	F099176	N/A	MELTNQQLKDLNDDVEEFIQKLSLHYNDDTLAIAAALTQWGLRLYKSELSTPEFAQLLIYTIETNRYL
Ga0334998_0044024_609_923	F047008	AGGA	MEKMTKAQKIVRKDLMAYVLESGGIVHTRPPQGDENGFALVAMPCAHNARHAKFYDVSFAWCADNDKFDRKIGEFLALERYMNCETTKLPGYIIDNMLEMDLVD