Scaffold Ga0334998_0040754

Overview

Basic Information

• Taxon OID: 3300034019
• Scaffold ID: Ga0334998_0040754
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3292
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F005146	Metagenome / Metatranscriptome	410	Y
F010680	Metagenome / Metatranscriptome	300	Y
F051794	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334998_0040754_1052_1357	F051794	GAGG	MKATDKRKANAEKRAVWLRNYQRARGRAQTRLAQQYPDQYKAILEQERLSDEANGKAWLDITGTTDNSDGVSTDTDGYDNAPRPKQTDRDEQDKGNLEGEG
Ga0334998_0040754_1813_2295	F010680	AGGAGG	LAIVIQLSQAEVRVCALIAVERWLVKFGSEDRPNYASGKKFGKLEPEINANIRANVAEWAVARHYNLGWNMPWYPNDLHKARKNISDVGDLEVRTIRTQAAIPFWKKDVGRTIVGAKVLDDEYYSLVEIYGKFQADEYMVDQFADLSIDGWRVPVELLEV
Ga0334998_0040754_216_404	F002827	GGAGG	MNKEYYQAKADLCRGLAIKQMVEGEAKEAGANLVRMVNALNQINLINYKEEKDNDNQSNPRV
Ga0334998_0040754_733_960	F005146	AGAAGG	MKPVNFYEVADRRSDSTWGGASASQAIEWFRRGLDNKLFVSVWNEEDIEEPKLVIDKIDITALVLATIVNEKEKG