Scaffold Ga0334998_0031327

Overview

Basic Information

• Taxon OID: 3300034019
• Scaffold ID: Ga0334998_0031327
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3827
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002287	Metagenome / Metatranscriptome	574	Y
F022872	Metagenome	212	Y
F035741	Metagenome / Metatranscriptome	171	N
F083794	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334998_0031327_1_330	F035741	N/A	MTANDVIGKYLIAEQNVPLFAFPGGSQIGMVNTGLVVGPVYSWIEKNNKLYWQFDYTIPGNAPGSYYAEHRPEFWKLSTTGSGGGAINLPGTTSLIPKWALPVALGALAL
Ga0334998_0031327_1282_1923	F083794	N/A	MTATQATKQLLDMGCVFLSIVDIEGSTIVPKQQNKFTTPADIKKQAEKINTYLKTAPNGTYVIEGRIGGTSKPTQIVIDKGEAAPAIAVSNSAPSRGISDPGAESVLSYRAALDMQNQIATLTAENNRLRDLVEALEGDLADIEEAQPEQMAESPAMGALGQLAAILPAVVDKWFENQKENREIEKAKLYQAAQARQAQAQYQSNGHSDYDSL
Ga0334998_0031327_1923_2741	F022872	N/A	MSWQIPTQIEQDIIAGKAQYRTFQTGVGGQSILPVPTNAYAVIFGYDFSPAGGGLIQNNFIGSATTQELNPSSIRFFETQQISFYTGADFYPFLHHINVNTSTAVRQYTNPLPPTAQDATFFQLFHEIDNTPIARQVYITSDKDITISVGLVLDSDVATTGAIPITNRTPALLTYGGSPQTPAVQTDFGPAATPIQFMQPSPKDFQDFAFGLLPNGANGQAFATPDATRGLIDPSVYLTTLGGADFRDAAAANYFLCLHYALYTRTIPEQRG
Ga0334998_0031327_3216_3806	F002287	N/A	MSQISKLGYVDNKLGAPSSGQQTTRIIFNTIEAPGTTSSLTFFKTFQGLTQGQTNLTQNRLDSMESQIIKTIWLAQYTTGGVLGPLGGLAQQTISIIVGNQTVVKNLPIHFNQGVNGQAFDRLHENAGCVSDSVVSASDTFQSAMPIEIRLLTDIVIPPQVAFEVRIDSNAGAYGTGAVVCALAGYGKIFSAGNTF