Scaffold Ga0334998_0019097

Overview

Basic Information

• Taxon OID: 3300034019
• Scaffold ID: Ga0334998_0019097
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5039
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002259	Metagenome / Metatranscriptome	577	Y
F006697	Metagenome / Metatranscriptome	366	Y
F042709	Metagenome / Metatranscriptome	157	N
F079602	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334998_0019097_1679_2176	F042709	GAGG	MNPLVLGLAAALFFLLRKKPPVVDNTTPDVVPFTAANVNAYKNENTRSLFDRRLASSARRVTPDGTGKAIVDGTYKCFAPGNQTRRNAIIKVYEDLDRLQTRINNSTGERREEARRDKIEKDNERAILVAEHYMICEAFFEELKKKSQTPTQTTVTTAQQERGTL
Ga0334998_0019097_27_293	F079602	N/A	MASGSVTRYVPKSEHNSQAPMGFFNLQMGHYNKISIHTRDFAQLAEVFEQITLFLKNNSGKLDQVVTKELDTYTTHHLKNLLNTNEPR
Ga0334998_0019097_2715_3275	F002259	N/A	MGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSQTTAALNHEFFKGAAQRAFPLTNVGANGNQFQVNEALLVEKIGFFIPSAANGIAYTGLVGAALSVKFDLVIGNKTVIKDATCELGGEQAFYNDGAVPSSVIDLEGVGILIPPQVEYYVVAKSFGTGTRVATSSRLGCYLFGTGALLNFNTTI
Ga0334998_0019097_3278_3817	F006697	N/A	MANQVQKLSYVDSKLGVSLPGQQTTRVIYDSVNAVAGQQFFEFFTNFAGKTEFQSNLTTNKLDSAESMVIKSVQIIINSETSNLADHLNLNITVGNQVVLKDFDPSFNATNRGLAFDRLHSGLNDGTNLEVRLLTEIVIPPQVNFKATLQISNALVAVNDDVTIIFKGYGRIFSAGNSF
Ga0334998_0019097_3829_4233	F000710	N/A	MASNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIILSSTTSAAPATIVNATQLRVTLTINNDVVIDDVVAHELGASVATGITTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI