NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334998_0016813

Scaffold Ga0334998_0016813


Overview

Basic Information
Taxon OID3300034019 Open in IMG/M
Scaffold IDGa0334998_0016813 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5390
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005585Metagenome / Metatranscriptome395Y
F019642Metagenome / Metatranscriptome228Y
F099166Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0334998_0016813_1757_2281F005585N/AMTGGLNMATRGTIFYAFTKSRDNSVFSSETHLTWRLSLSQQNYQEWWRVQSAKIRISISLDTPLSYLFADSVHQKIGTTLSLTRNHNQHQWCDTCKKRYGQLKDGSWHLKAQVPAVWKVQSETPNRRMQVRFYCQPCADEVQNWPDGTFWSLKEQLQAAIDDFAGREQLDVKLS
Ga0334998_0016813_3474_3959F099166GGAMAIKDLSLKLAAISLLADQAKRLKDELRAELQAEMNQLGADRVKAELGDEVVAYITTSKPKFKWVIKSDRKALEWFKAYYPSEVIETIRPSSLEAILDKFNYQDDVVIDPNGEVVDWLEGSLAEPYLTTKFHGEGRAILRDALIGLKRNELDVKEILELEG
Ga0334998_0016813_518_709F019642N/AMQVSEFAATLASVLGSIGLLIAGLRYIIKLENLPIVSRLDKMESQLELALSAKVARSGNKKTR
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