Scaffold Ga0334998_0005054

Overview

Basic Information

• Taxon OID: 3300034019
• Scaffold ID: Ga0334998_0005054
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10307
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (22.73%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002259	Metagenome / Metatranscriptome	577	Y
F003659	Metagenome / Metatranscriptome	474	Y
F005775	Metagenome	390	N
F006697	Metagenome / Metatranscriptome	366	Y
F008615	Metagenome / Metatranscriptome	330	N
F011474	Metagenome / Metatranscriptome	290	N
F016114	Metagenome / Metatranscriptome	249	Y
F026828	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334998_0005054_1_222	F011474	GGA	MKEKIDHLTHFDIVVKEELAGCDNADQMLHVLSSNYDLRKPLGGITKAAFTIGLRTAVGMLKPEVIANFNYRPK
Ga0334998_0005054_1774_2178	F000710	N/A	MASNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIILSSTTSAAPATIINATQLRVTLTINNDVVIDDVVAHELGASVATGITTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI
Ga0334998_0005054_2190_2741	F006697	N/A	MANQVQKLAYVDNKLGVSLPGQQTTRIIYDSVNAAAGQQFFEFFTNFAGKTEFQTNLTTNKLDASESMIIKSIQILGDFNGTPTPADLAGHMNLNITVGNQVIIKDFDPSFNAGSRGLSFDRLHSGFTSTANLELRLLTEIVIPPQVNFKATLQLSNTLIAVNDDITIVLKGYGRIFSAGNSF
Ga0334998_0005054_2744_3301	F002259	N/A	MGMSAQDKMLNVASRLGLTSLKDMQGTTRMVYDSQTTAALNHEFFKGASQRAFPLSNVGANGNQFQVNEALLVEKIGFFIPTAADGINYTGLTAGFSVKFDLIIGNKTVIKDATCEFGGEQAFYNDGTAASGVIDLEGVGILIPPQVEYYVVAKPFNGGTRVASSQRLGCYLFGTGALLNFNTTI
Ga0334998_0005054_5726_6121	F005775	N/A	MAKQRPIYTKAQHQIVTPAFVEKKIQLHKSIKWTTKDDRDLFIMVSGSVTRYVPKSEHNSQAPMGFFNLQMGHYNKISIHTRDFAQLVEVFEQLTLFLKNNSGKLDQVLTKELDTYTTHHLKNLLNTNEQP
Ga0334998_0005054_6121_6288	F016114	N/A	MENKYWAAAFFDSRDVETINDMAAMARRMLISQRELQRDELLRLKMKYPHLTTKD
Ga0334998_0005054_6290_6622	F008615	N/A	MNTHNTFGAKMFGRFIKKGWHISFTDSYQDRVCVIPPERLDAQHVFGIYIPVMRHTWQPDLKREWWAALQSKDCMLGPKFEATAHPDDIERFAAFAAWIGDLLRNPEKFT
Ga0334998_0005054_6916_7029	F026828	N/A	MSEELIANAIAFLAGWILKRPDFVQKILSKLFAKKDK
Ga0334998_0005054_8163_8534	F003659	N/A	MPLIASQVVGRYLIAREDVPVYDFPNGTRIGTIPKGNSTAEVYSFVQRPGQVWWMFDYTIPGQTPGAYYVLQKDGRFTLSAAAGNVLVRPSSLPSVDVFPAGGIKKYALFGALGLLALLILKK
Ga0334998_0005054_9218_9484	F011474	N/A	MKEKIDHLTHFDIVVKEELAGCDNADQMLHVLSSNYDLRKPLGGITKAAFTIGLRTAVGMLKPEVIANFNYKAKELKETRYPHLKIFR