 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034019 Open in IMG/M |
| Scaffold ID | Ga0334998_0002868 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13852 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (63.16%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002433 | Metagenome / Metatranscriptome | 559 | Y |
| F007466 | Metagenome | 350 | Y |
| F007799 | Metagenome | 344 | N |
| F011152 | Metagenome | 294 | Y |
| F028163 | Metagenome | 192 | N |
| F029109 | Metagenome | 189 | Y |
| F030695 | Metagenome | 184 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334998_0002868_11243_11440 | F002433 | N/A | VSVGEWTAVGGLVLAVLTAIYSSMRFMVKSIMRELSPNGGNSLKDQVSRIEVRLDQLMLEIALKK |
| Ga0334998_0002868_11683_12348 | F007799 | AGGCGG | MSFLENYEDVAARIQRFWATHKDGKIHTSIMDINLEKGYVLVECRVYRHYDDQEPAGIDYAFGNVNTYNVQMKKWFVEDTVTSAIGRCVGLVLGSDKRPTVQNMQQVERIDSKIVQDSAVAYDYWNTKHGDVPSFKTREEAEEAGIPTLGVAIDTIKETLGGVQVAAAPMCAHGHMIWKEGVSAKNNKGWGGYMCVEKVKAKQCPPAWYMLGSDGQWRPQV |
| Ga0334998_0002868_12425_12619 | F028163 | N/A | MSRVTEMIDVDLMIGRTLIDGKIVAEFKCGQCDNCQRIEILDRAGYLRAVGGEPVLWFCGQCRK |
| Ga0334998_0002868_12607_13098 | F011152 | N/A | MQKMTVTPADEWAIHKRASDVVFAQEAILGVIQYYNKLNNHERVVEYAESLAAELCVARYFGLDYDINDNKGKSRSDVGKGIEVKWTSYQGGNLIISPNDRESDVAVLVVGKSPVYYIVGWLPVSFAKRKRFKNPRQESWWVDQGNLNPIENLARSEYAAIAI |
| Ga0334998_0002868_4484_5104 | F030695 | AGGAG | MPAIITVASLRSVLGVSVALYSNEYLESIIDSAEQVILPLLTANQNSIAAVYLQNNVAYYITQKPNTFVAGQSVVITGCVPSTFNGTLTVTSNYYDPFPYLPFAYPAPYFYFTAAITNSDITFRPVIPGGVVYLSGADAATLYANTDAVEQAVTIVSVEIFQSVVAPGGQIEGVDFAPSPFRMGRSLQNRVIGLLGNYIDVSTMAM |
| Ga0334998_0002868_6316_6861 | F029109 | GGAG | MAFKATKGQGTFRIEVEPYALKNLISTLNLLDKETQGRVRDAAQPLSKRLAGQIMMFGHGSPTPQTKLVLQSIVTPRDRLIRVDIGGPKKVGRAYGGRPSKSGKGAKVGRTQAPAGALLWGSEYGSRPGQDRAGRKYTNRFKVPYNREGYWLNKSVDFYTPVVAQEYISIVTGIINDLGL |
| Ga0334998_0002868_8288_9535 | F007466 | AGG | MTQWAPIWRVKIDGVDVTDSVLANLTITSGRINIYEQAQAGYCSVNLIVFGQAALPYEINDTISIEVQDTSAVYVPIFGGSVVDIAVSVSQVGSSAYTQEVTITALGALARLQKALTDGVLAHDFDGDQIATILREVLFAQWQQVPAALQWNAYNPTTQWQDAENTGLGEIDQPGNYELAQRSSDRIIVYDLVAALASSGLGYLYEDASGLISYADSTHRTTYLAANGYTDLTANHALGQGITIKTRAGDVRNDITISYGQNSSNQVSDTDQASIGLYGDLSQIFTTTLRHLHDAEDQAAFYLALRAYPQPIFDSITYALTNPELDNGDRNALINVFMGQPIALNDLPINMSAGTFQGFVEGWTFRASYNQLDITLLMSPLAYSLQAMRWNDVPINELWNTVSPILQWQYATIVS |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |