Scaffold Ga0334998

Basic Information
Taxon OID	3300034019 Open in IMG/M
Scaffold ID	Ga0334998_0001226 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034019 Open in IMG/M

Scaffold ID

Ga0334998_0001226 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21396
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (87.10%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

21396

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (87.10%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F005146	Metagenome / Metatranscriptome	410	Y
F020162	Metagenome / Metatranscriptome	225	Y
F026539	Metagenome / Metatranscriptome	197	Y
F037190	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334998_0001226_11449_11667	F020162	GAGG	VDDEQDYVPRSITLADFLVVLSGFAVNIIRAIEMLASEILDLAVYNANRKTKVSRVWEQFTSDLEKMEDNNG
Ga0334998_0001226_16748_16897	F037190	AGGA	MDRYLLIELGSEGIAFETAQFDFYASWLGIGIAIASLVAYRIIKSRKGA
Ga0334998_0001226_18217_18387	F002827	AGGAG	MNKEYYQAKADLCRDLAIQQMTEGDSKEAGANLIRMVNALNELQLINYKEEKREAN
Ga0334998_0001226_18374_18601	F005146	AGGAGG	VKLTNFYEVMDRKGDISWGGASPSEAVEWFRRGLDNSIFVSVWNEQDIENPVLVTDKIEVTALVLATITSERSRG
Ga0334998_0001226_20597_21229	F026539	GAG	MTETHPSAGDIVFSVARTIFSRYRNFVEREDVVQECWSWYYSRAEHFNQLLSEENTVQRVINEKRMAWQMKRHAERYARREKATRSGYKLTDEAFYDTVVIAQLLPHVIASVVDNTVLEQAQNLINDGQPKKQSAPAEGGNLLATLIDIKKAYLKLDVVDKDILIKRYHENLTLQELASYLECAISTADRRCQSSLRKLQNNLGGDSPYQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334998_0001226

Overview

Ecosystem & Geography

Associated Families

Sequences