Scaffold Ga0334998_0000688

Overview

Basic Information

• Taxon OID: 3300034019
• Scaffold ID: Ga0334998_0000688
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28999
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (61.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006785	Metagenome / Metatranscriptome	364	Y
F007971	Metagenome / Metatranscriptome	341	Y
F017122	Metagenome / Metatranscriptome	242	Y
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334998_0000688_17537_17860	F017122	N/A	MEVVPFQEQQDPELRLGEGRSRTSSDKAQLFELKIWLPGQGAMRDLVRAESLQQAIEFAQNRYPKCKVEVPTAAAKKPKLARAKNGPRETARRRLKLVEKRNESANR
Ga0334998_0000688_17841_18011	F043896	GGAG	MSQQIAEWARQSWGKVIVDQNRADLLDKLYFWDGRDQKDHPLHSTYTGLYRKYTVN
Ga0334998_0000688_20876_21013	F007971	N/A	MATKAKTGTGRLEHQAGRPKTTRQGYGQHSRPRRRGKKKLVGQGR
Ga0334998_0000688_4945_5343	F006785	GAG	MFTSQRDRADAREAEREQLRLEKRHLRDLRWAVERSSIEASDWADLLALQAAHGKEGPLQVWRELVPYWRNCQRLNGGADIPAELFPQATGIFPRTPEPVKAPANRAKATPGAPRKRRSDAGKRQPSRKEAA