NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0338135

Scaffold Ga0334985_0338135


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0338135 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)927
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003291Metagenome / Metatranscriptome495Y
F010916Metagenome / Metatranscriptome297Y
F093862Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0338135_345_554F093862N/AMNIMTVKFESELQIKALTKLLSAVYETPVRPRGRHSDRKSVLGFKWRKWSQNDIPWRMAERVTFYKVNR
Ga0334985_0338135_36_302F010916N/AMVSKHDYSYMMSDSHSVWESGMVYEKHIKAKIHALCAIHREDAEALYNEVKAVAGPDYNDYDKNGYGLKYRVINEWFEVYIGMSSISS
Ga0334985_0338135_574_897F003291N/AMNFIFKPLNLSNMNTKQINEKLVSVFTQDELASLMTAMAGYVNVKRKQGRSTGIECVVFNKVCDALLLSNELNAVVIDSKPNPNAPMGSAAYKAYEAMYDSDVRAHS
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