NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0101297

Scaffold Ga0334985_0101297


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0101297 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2037
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047663Metagenome149N
F072295Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0101297_158_478F072295AGGAGMAVTLGRDGGAPTGGNGATGVIAVTWNQESTAIDVSHRGIVNASGISYKAATGGFITRTAEIECLDATAVISSLAGAGTGYIVTNVSENRPLDGPVTFTLTAKKTS
Ga0334985_0101297_1585_2031F047663N/AVSIQADIITALVASLDAVTFTATAATVTVETKNFPQYDIEDLADPVICITDGSIESERIARSSHMRDYAVEIYLARHTPEEADCDVMLEMLEELLGYLEDHNWPGITWPTGVTSPQTIVVEKNPGEALQERNVWRAGIVVTFKVPRSH
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