Scaffold Ga0334985_0052218

Overview

Basic Information

• Taxon OID: 3300034018
• Scaffold ID: Ga0334985_0052218
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3022
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023036	Metagenome	211	Y
F039471	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334985_0052218_1299_1655	F039471	GAGG	MDEFYLIVLARKTRDKGSKLTRVAKCSFDHYSAPGGVVAGRWYNLHIYDSPFRGMLDAVFVGLDSDPGIRAAEALAERMVSGLSLASGVKWEANCGPIDAEDAALLRIELEVLNLFGD
Ga0334985_0052218_1648_1905	F023036	GGAGG	MTGTVNVNTTQPADWAEFIRNAASVEGIEVSAFYGYAAVDRAIRVLAMDPAEAWAKLSERKRGRPVHYNPKDAPAVKRKRGRANG