NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0047244

Scaffold Ga0334985_0047244


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0047244 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3205
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018127Metagenome / Metatranscriptome236Y
F029017Metagenome / Metatranscriptome189Y
F074372Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0047244_204_446F029017AGCAGGMTEIGLITWYIVQLVLWAGPLGVGVFLAAIAAAAFYAGYSMRPKRADKPMGAAKLDHIKYDILPDGTLGPGDPRGLEDGE
Ga0334985_0047244_2931_3086F074372AGGMTDDDEKTRNLQDKVYWLEMRVKLLQERNKELRQWITKLTNKNHPARRAGK
Ga0334985_0047244_446_823F018127GGAGMTKQKDNWIPWAIIAGLAFYVFSQQPKGGGDPSTAAGVTAVVRSTIPSIRAAYKQAFLDAAAKIESGEIKDQEQWTKFIADNAGGKNREALDKVYSAIDELKLPVTFAGKEKELAKINREIAGAW
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