Scaffold Ga0334985_0029769

Overview

Basic Information

• Taxon OID: 3300034018
• Scaffold ID: Ga0334985_0029769
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4174
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F062749	Metagenome	130	Y
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334985_0029769_2791_2964	F102493	N/A	MTTTLTLTLHFDYENDDRENNIRGGWVLTDITNGKTPVHLSPKLEQLLNEELDPENF
Ga0334985_0029769_2968_3159	F062749	N/A	MKTKPSLILWAISALFMSFWSVKFAMSGVFYGNSEFITFTLSLCASLVSAVCGAGFMQQWLKK
Ga0334985_0029769_3144_3572	F041191	GGA	MVEKMKLLWKPTKLTCEFIVPDLDKSDGVQKVIGFSRGWHHWNSIRLGIRKEDTYIVLYFYAYINGKRVIQRLGRFEIGENVSVALQWGYYIECKANDGYAFRVAPKCSFPIGYLLNSYAEKDGVEGVEVPINIEIMNLKIS