Scaffold Ga0334985_0025762

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334985_0025762

Scaffold Ga0334985_0025762

Overview

Basic Information
Taxon OID	3300034018 Open in IMG/M
Scaffold ID	Ga0334985_0025762 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4528
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (58.82%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011579	Metagenome / Metatranscriptome	289	Y
F026559	Metagenome / Metatranscriptome	197	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334985_0025762_4142_4315	F026559	AGGA	MKYQIIERFAWYFPDNDIEVSVYRKQSYFRRFIMWLFFDAELRTYYKTLDNCQVKKG
Ga0334985_0025762_4312_4524	F011579	N/A	LALYVLINDYFVPASDGEEVTYDELPKLYELYKERKHDGVSQFVADKRGIPNIYWKDEGSDFQKRVKDSQ

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