Scaffold Ga0334985_0018934

Overview

Basic Information

• Taxon OID: 3300034018
• Scaffold ID: Ga0334985_0018934
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5362
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011938	Metagenome / Metatranscriptome	285	Y
F013878	Metagenome / Metatranscriptome	267	Y
F017101	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334985_0018934_1061_1282	F017101	GAG	MQDRMTVLESIIQDVAKALFQKWANALPEDQRSEETIASLNKNATESTYFVVKMFMDKFNEAAEQLKSQPDEQ
Ga0334985_0018934_3957_4154	F011938	GGAGG	VKEYYDVVSVVYIHSEQCHGTVEKLGAWASIVKYNKNGMEYSELMENEEFSIIDEIVFKHIEESQ
Ga0334985_0018934_4740_4967	F013878	AGG	MLNLTELGVEVFMKKAKYVTPFWDNYDLVIWKKDINGFTNVKGMFKENTWGTTERISVDSDGIWKLPTKHVKHFK